If you adore the warm flavors of fall wrapped into a soft, tender bite, you are absolutely going to fall in love with this Fluffy Pumpkin Cream Cheese Swirl Muffins Recipe. These muffins are an irresistible blend of spicy pumpkin-spiked batter swirled with a luxuriously creamy cheesecake center, all baked to fluffy, moist perfection. Whether you’re looking for a comforting breakfast treat, an afternoon pick-me-up, or a festive addition to your seasonal gatherings, these muffins hit every note perfectly and are surprisingly simple to make. Get ready for cozy bites of autumn magic in every swirl.

Ingredients You’ll Need
Getting to know the ingredients in this recipe is like meeting new friends who each bring their own delightful contribution. The pumpkin puree offers natural sweetness and moisture, while cream cheese creates that dreamy swirl of richness. The spices—cinnamon and nutmeg—bring warmth and depth, and the combination of eggs, oil, and flour delivers the fluffy texture you crave. Let’s take a closer look at these simple but essential components.
- Cream cheese (6 oz): Softened to silky smoothness, it’s the star of the velvety swirl that contrasts the pumpkin batter.
- Granulated sugar (2 tbsp and 3/4 cup): The first part sweetens the cream cheese; the larger portion sweetens the pumpkin batter perfectly.
- Vanilla extract (3/4 tsp total): Adds subtle floral notes in both mixtures to enhance flavor complexity.
- Pumpkin puree (1 cup): Naturally moist and flavorful, this gives your muffins that quintessential fall vibe and vibrant orange color.
- Vegetable oil (1/2 cup): Keeps the muffins tender and moist without overpowering other flavors.
- Eggs (2 large): Help bind the ingredients and add structure for those fluffy tops.
- All-purpose flour (1 3/4 cups): The backbone of the muffin, providing structure without heaviness.
- Baking powder (1 tsp): Your rising agent to create the fluffy, airy texture.
- Cinnamon (1/2 tsp): Infuses every bite with warming spice perfectly paired with pumpkin.
- Nutmeg (1/4 tsp): Adds a hint of aromatic depth that elevates the fall flavor profile.
- Salt (1/4 tsp): Just enough to balance sweetness and intensify all flavors.
- Nonstick spray: Ensures your muffins come out of the pan cleanly and keep their beautiful shape.
How to Make Fluffy Pumpkin Cream Cheese Swirl Muffins Recipe
Step 1: Prep Your Oven and Muffin Tin
Start by heating your oven to 375°F (190°C). Line a 12-cup muffin pan with paper liners for easy cleanup and beautifully shaped muffins. Give those liners a light spritz of nonstick spray so your muffins slide out effortlessly when baked.
Step 2: Make the Cream Cheese Swirl Mixture
Grab a small bowl and beat together softened cream cheese, 2 tablespoons of granulated sugar, and 1/4 teaspoon vanilla extract until completely smooth. This luscious cream cheese mixture will create pockets of creamy delight inside every muffin.
Step 3: Mix the Pumpkin Batter
In a large bowl, whisk the pumpkin puree, vegetable oil, eggs, 3/4 cup sugar, and 1/2 teaspoon vanilla until fully combined and smooth. This vibrant orange batter is packed with cozy fall flavors and a perfect base for your muffins.
Step 4: Combine the Dry Ingredients
In a separate bowl, whisk together the all-purpose flour, baking powder, cinnamon, nutmeg, and salt. This dry mix will evenly distribute the spices in every bite and help the muffins rise perfectly.
Step 5: Bring Wet and Dry Together
Gently fold the dry ingredients into the wet pumpkin mixture. Stir just until combined — don’t overmix or your muffins might turn dense rather than fluffy. You want a tender crumb that melts in your mouth.
Step 6: Layer and Swirl Batter in Muffin Liners
Now the fun part: spoon about 2 tablespoons of batter into each muffin liner. Add 1 teaspoon of the cream cheese mixture right in the center, then top with another spoonful of pumpkin batter. Use a toothpick to swirl the two together lightly — this creates those signature creamy pockets and gorgeous marbled tops.
Step 7: Bake to Perfection
Pop the muffins into your preheated oven and bake for 20 to 22 minutes. You’ll know they’re ready when the tops are set and a toothpick inserted comes out mostly clean. The aroma filling your kitchen will be pure autumn bliss.
Step 8: Cool and Enjoy
Let the muffins cool in the pan for about 5 minutes before transferring to a wire rack to cool completely. This step helps them set up and makes them easier to enjoy without crumbling.
How to Serve Fluffy Pumpkin Cream Cheese Swirl Muffins Recipe

Garnishes
These muffins are stunning all on their own, but you can take them over the top with a light dusting of powdered sugar or a drizzle of honey for a glossy finish. A sprinkle of chopped pecans or a pinch of cinnamon on top adds wonderful texture and extra warmth.
Side Dishes
Serve alongside a steaming cup of chai latte or freshly brewed coffee to complement the spice notes in the muffins. They also pair beautifully with creamy yogurt or a smear of butter for a simple yet satisfying breakfast or snack.
Creative Ways to Present
Turn your Fluffy Pumpkin Cream Cheese Swirl Muffins Recipe into a festive brunch centerpiece by arranging them on a rustic wooden platter with seasonal fruit like sliced pears or figs. For a playful twist, you can also slice muffins in half and use them like mini sandwiches with a spread of maple butter or your favorite nut butter.
Make Ahead and Storage
Storing Leftovers
If you have any muffins leftover (and that’s rare!), store them in an airtight container at room temperature for up to 2 days. They stay moist and fluffy when kept away from air exposure.
Freezing
These muffins freeze beautifully for up to 3 months. Simply wrap each muffin individually in plastic wrap, then place them in a freezer-safe bag or container. Thaw overnight in the fridge or at room temperature before serving.
Reheating
To enjoy your muffins warm as if freshly baked, microwave individually on medium power for about 15 to 20 seconds or pop them in a toaster oven for a couple of minutes. The cream cheese swirl will become even creamier and the muffin delightfully soft.
FAQs
Can I use canned pumpkin for this recipe?
Yes! Canned pumpkin puree works perfectly and is actually the most common ingredient used for baking pumpkin treats. Just make sure it’s plain pumpkin puree, not pumpkin pie filling which has added sugars and spices.
What if I don’t have cream cheese? Can I omit it?
The cream cheese swirl is what makes this recipe special and adds moisture and richness, but if necessary, you can omit it. The muffins will still be tasty pumpkin muffins, just without the creamy ribbon inside.
Can these muffins be made gluten-free?
Absolutely! Substitute the all-purpose flour with a 1-to-1 gluten-free baking flour blend. Keep in mind that the texture might be slightly different, but they will still be delicious.
How can I make these muffins extra moist?
Using vegetable oil as the fat source already helps keep these muffins moist. Make sure not to overbake them and try adding a tablespoon of sour cream or yogurt to the batter if you want to experiment with extra moisture.
What is the best way to swirl the cream cheese into the batter?
Use a toothpick or thin knife to gently swirl the cream cheese mixture into the pumpkin batter after layering them in the muffin tins. Light, circular motions create pretty marbling without blending the mixtures completely.
Final Thoughts
I truly hope you enjoy making and eating this Fluffy Pumpkin Cream Cheese Swirl Muffins Recipe as much as I do sharing it with you. There is something so comforting and joyful about these little bundles of pumpkin-spiced happiness that feel like a warm hug in muffin form. Whether for a casual breakfast or a festive treat, these muffins bring the coziness of fall right to your kitchen and your heart. Go ahead and give them a try—you might just find your new favorite seasonal recipe.
Print
Fluffy Pumpkin Cream Cheese Swirl Muffins Recipe
- Prep Time: 15 minutes
- Cook Time: 22 minutes
- Total Time: 37 minutes
- Yield: 12 muffins
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
These Fluffy Pumpkin Cream Cheese Swirl Muffins combine the rich, creamy tang of sweetened cream cheese with moist, spiced pumpkin batter. Perfectly balanced with warm cinnamon and nutmeg, these muffins are delightfully tender and topped with a beautiful cream cheese swirl, making them an ideal fall treat for breakfast or snack time.
Ingredients
Cream Cheese Swirl
- 6 oz cream cheese
- 2 tablespoons granulated sugar
- 1/4 teaspoon vanilla extract
Muffin Batter
- 1 cup pumpkin puree
- 1/2 cup vegetable oil
- 2 large eggs
- 3/4 cup granulated sugar
- 1/2 teaspoon vanilla extract
- 1 3/4 cups all-purpose flour
- 1 teaspoon baking powder
- 1/2 teaspoon cinnamon
- 1/4 teaspoon nutmeg
- 1/4 teaspoon salt
- Nonstick spray for muffin tin
Instructions
- Preheat Oven and Prepare Pan: Preheat your oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners and lightly spray them with nonstick spray to ensure easy removal.
- Make Cream Cheese Mixture: In a small bowl, beat together the cream cheese, 2 tablespoons of granulated sugar, and 1/4 teaspoon vanilla extract until smooth and creamy. Set aside.
- Combine Wet Ingredients: In a large bowl, whisk together the pumpkin puree, vegetable oil, eggs, 3/4 cup granulated sugar, and 1/2 teaspoon vanilla extract until fully blended and smooth.
- Mix Dry Ingredients: In another bowl, whisk together the all-purpose flour, baking powder, cinnamon, nutmeg, and salt to distribute the leavening and spices evenly.
- Combine Wet and Dry: Gradually add the dry ingredients into the wet pumpkin mixture, stirring gently just until combined. Avoid overmixing to keep the muffins tender.
- Assemble Muffins: Spoon about 2 tablespoons of batter into each muffin liner. Add 1 teaspoon of the cream cheese mixture on top, then add another spoonful of batter over the cream cheese. Use a toothpick to gently swirl the cream cheese into the batter for a marbled effect.
- Bake: Place the muffin tin in the preheated oven and bake for 20 to 22 minutes, or until the muffin tops are set and a toothpick inserted into the center comes out mostly clean with a few moist crumbs.
- Cool: Let the muffins cool in the pan for 5 minutes. Then transfer the muffins to a wire rack to cool completely before serving.
Notes
- Ensure not to overmix the batter to keep the muffins light and fluffy.
- Make sure the cream cheese mixture is smooth and without lumps for the best swirl effect.
- You can substitute vegetable oil with melted coconut oil for a subtle flavor difference.
- For a dairy-free version, use vegan cream cheese and oil substitutes.
- Store muffins in an airtight container at room temperature for up to 2 days or refrigerate for up to 5 days.
- Reheat muffins gently in the microwave for 15-20 seconds for a warm treat.

